Rules

Here you can quickly find iKISS snakemake rules list :

rule kmers_gwas_per_sample *
rule kmers_to_use
rule kmers_table
rule extract_kmers_from_bed
rule index_ref
rule index_ref_to_assembly
rule mapping_kmers
rule filter_bam
rule kmer_position_from_bam *
rule merge_kmer_position
rule samtools_merge
rule pcadapt *
rule merge_method
rule outliers_position
rule extracting_features_from_gff
rule kmers_bedtools_intersect
rule get_pca_from_phenotype
rule lfmm *
rule mergetags
rule mapping_contigs
rule contigs_bedtools_intersect
rule intersect_and_contigs
rule intersect_and_outliers
rule aggregate_presence_absence_matrix
rule filter_presence_absence_matrix
rule merging_annotations_and_binary_matrix
rule fastq_stats
rule report_ikiss
rule html_ikiss

• rules with a * can be parallelized.