About iKISS

iKISS (Kmer Inference Selection and Structure) is a snakemake reference-Free pipeline for inferring diversity, structuration, selection and genotype-phenotype association.

iKISS uses KmersGWAS, PCADAPT and LFMM to select genomics regions under selection.

IKISS PIPELINE

Install

• Install iKISS
  • Cluster mode
  • Local mode

Edit a profile

• Edit your profile

Running a data test

• Running a datatest

Sections

• Pipeline configuration file
  • Data section
  • Workflow section
  • Params section

Modules

• iKISS modules
  • Kmers module
  • PCADAPT
  • LFMM
  • SNMF
• Go away with outliers
  • MAPPING_KMERS
  • ASSEMBLY_KMERS
  • INTERSECT
• Go away on global mode
  • GLOBAL MODE

Output

• iKISS Output
• Rules

About Us

• Authors

License

• GNU V3

Thanks

The authors acknowledge the IRD i-Trop HPC from IRD Montpellier and the IFB for providing HPC resources that contributed to this work.

Contributions

iKISS is inspired from culebrONT project.

iKISS uses SnakEcdysis package to perform installation and execution in local and cluster mode.